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ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and <t>REVERT</t> <t>total</t> protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test
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ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and <t>REVERT</t> <t>total</t> protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test
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ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and <t>REVERT</t> <t>total</t> protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test
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ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and <t>REVERT</t> <t>total</t> protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test
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ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and REVERT total protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test

Journal: BMC Biology

Article Title: Proteomics analysis of human mesenchymal stromal/stem cell sarcomagenesis model identifies ALDH1A3 and CD99 as potential targets in the transformation process

doi: 10.1186/s12915-025-02498-z

Figure Lengend Snippet: ALDH1A3 and CD99 participate in sarcomagenesis-related processes. A) Ingenuity Pathway Analysis (IPA) analysis shows ALDH1A3 and CD99 molecular interactions with key proteins involved in the overall inhibition of cell death of tumor cell lines (i-ii) and overall activation of cell proliferation of tumor cell lines (iii-iv). Predicted activation or inhibition states were inferred based on the expression values in the dataset, using IPA’s curated molecular interaction database and upstream regulator analysis. B Representative Western blot images showing ALDH1A3 and CD99 abundance levels in normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples. GAPDH and REVERT total protein stain is shown at the bottom and served as normalization controls (i). Quantification of ALDH1A3 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) BM-hMSC samples (ii). ( N = 3 independent experiments, * = p -value < 0.05). Full-length blots are presented in Figure S1. Quantification of CD99 abundance ratio comparing normal ( n = 4; N1–N4), immortalized ( n = 3; I1–I3), and transformed ( n = 3; T1–T3) MSC samples (iii). ( N = 3 independent experiments, **** = p -value < 0.0001). Statistical significance determined by one-way ANOVA post hoc Tukey’s test

Article Snippet: Gels were transferred to ImmobilonTM FL PVDF membranes (ThermoFisher Scientific, cat.#88,025) using BoltTM Mini Module, stained with LI-COR REVERT total protein stain (cat.#926–11,010), and imaged using LI-COR Odyssey CLx (Auto intensities 700/800).

Techniques: Inhibition, Activation Assay, Expressing, Western Blot, Transformation Assay, Staining